Managing grant accounting and compliance is one of the most critical responsibilities for any nonprofit organization. Securing a major grant is a major milestone, but the real work starts once the funding is awarded: tracking, documenting, and reporting every dollar correctly.. The bigger challenge is managing grant funds with clear documentation, strong controls, and audit-ready reporting.
Grant accounting isn’t just an administrative task; it builds long-term sustainability and funder trust. By ensuring every dollar is used as intended, nonprofits strengthen their credibility and improve their chances of securing future support. In this post, we’ll cover the key principles of grant accounting and provide practical steps to stay compliant with confidence.
What is Grant Accounting?
Grant accounting is the process of tracking, managing, and reporting the use of funds awarded through a grant to ensure they are spent exactly as intended. Unlike general accounting, which looks at the overall financial health of an organization, grant accounting focuses on accountability to funders. Its primary purpose is to provide clear documentation showing every dollar aligns with the grant agreement, reinforcing transparency and trust.
The Importance of Grant Compliance
While grant accounting tracks finances, compliance ensures that the organization meets every requirement outlined in the grant agreement. This extends beyond financial responsibility and includes following programmatic guidelines, meeting reporting deadlines, and maintaining proper documentation to demonstrate accountability.
This level of rigor is essential to building funder relationships and ensuring the financial health of your projects. Strong compliance matters because the risks of falling short are profound; failure to comply can result in the clawback of funds, fines, audit findings, and, most damagingly, the inability to secure future grant funding.
At Scrubbed, we understand this complexity and have successfully assisted numerous clients in navigating these needs. By demonstrating responsible stewardship of resources, your organization not only meets today’s obligations but also builds the foundation for long-term sustainability and growth.
What are the Key Components of Grant Compliance?
Grant compliance involves several core disciplines and each one needs consistent attention to stay aligned with funder expectations. Together, these components help ensure your organization meets both funder requirements and regulatory standards:
- Financial Compliance: Proper allocation of funds, adherence to the approved budget, and accurate documentation of all expenditures. Every financial transaction should be supported with receipts, invoices, and payroll documentation.
- Programmatic Compliance: Ensuring that grant-funded activities are carried out as described in the grant agreement.. This includes delivering services, meeting program goals, and reporting progress against the outcomes defined in the grant..
- Regulatory Compliance: Adhering to laws, regulations, and specific funder requirements. For federally funded grants, this may involve strict adherence to the Uniform Guidance or other federal standards.
- Reporting Compliance: Submitting timely, accurate, and complete reports to funders. These reports typically include financial statements, program updates, and outcome measurements.
- Recordkeeping and Documentation: Maintaining organized records that demonstrate compliance across all areas. Strong documentation supports audits, evaluations, and future funding applications.
- Internal Controls and Oversight: Establishing clear policies, approval processes, and monitoring systems to prevent errors, fraud, or mismanagement. Strong internal controls improve accountability and reduce the risk of errors, fraud, or misuse of funds.
What are the Key Components of Grant Compliance?
Even with strong processes in place, common compliance challenges can still create audit risk and reporting issues.. Understanding these pitfalls is essential to preventing errors:
- Inadequate Documentation: This is the most common issue. Missing receipts, incomplete invoices, or insufficient time tracking for grant-funded staff are among the most frequent compliance issues. Without proper records, it becomes difficult to justify expenses during an audit.
- Budget Deviations: Exceeding an approved budget category without prior funder approval creates significant compliance risk.. Significant changes should always be communicated in advance and documented with written authorization.
- Incorrect Cost Allocation: Charging expenses to the wrong grant or allocating them to general funds can result in serious compliance violations. A clear, consistent system for assigning costs ensures accuracy and protects the integrity of financial reporting.
- Managing Multiple Funding Sources: This is one of the most complex challenges, particularly when an organization receives different grants for the same program. Each funder often dictates unique rules for allowable expenses, indirect cost rates, time-and-effort reporting, and close-out deadlines. Most accounting systems aren’t designed to track these requirements in parallel, which is where breakdowns often occur.
To reduce these risks, particularly the lack of real-time visibility, we build centralized monitoring sheets that integrate directly with our clients’ accounting systems. By mapping specific rules to accounting codes and programmatic activities, we ensure that any expenditure compliant with one funder but non-compliant with another is immediately flagged for correction.
Best Practices for Managing Grant Accounting
Effective grant accounting is a critical component of financial management for nonprofits. It ensures that funds are used as intended, provides transparency to funders, and demonstrates accountability throughout the grant lifecycle.
By following these best practices, organizations can strengthen compliance, build funder trust, and create a foundation for sustainable growth.
Understand Grant Requirements Thoroughly
Begin by carefully reviewing each grant agreement to identify allowable costs, reporting deadlines, and documentation standards. A clear understanding of these requirements from the start helps prevent compliance issues and ensures your accounting practices align with funder expectations.
Implement Strong Internal Controls
Establish policies and procedures that govern how grant-related transactions are approved, recorded, and monitored. To make this effective in practice, we help clients create custom approval matrices and embed staff training directly into the workflow. These controls — segregating duties, enforcing approvals, and setting spending limits — are frequently reviewed during audits and help protect the reliability of your financial records.
Maintain a Comprehensive Grant Tracker
Keep a centralized grant tracker that captures all essential details for each award, including classifications (restricted vs. unrestricted), conditions, reporting schedules, and cash flow timelines. This has real operational impact. For one client, a unified tracker significantly reduced year-end reconciliation time.A well-maintained tracker serves as a single source of truth, helping staff stay ahead of deadlines and make better financial decisions.
Track Each Grant Separately
Use fund-based accounting to treat each grant as a distinct financial entity. Whether through dedicated fund codes or grant management software, this separation prevents commingling of funds and provides clear, accurate reporting for each grantor. This structural separation is vital for demonstrating the financial clarity that funders require.
Conduct Regular Reviews and Reconciliations
Review grant activity on a consistent schedule to confirm that expenses match the approved budget. This practice yields immediate results; after implementing regular reviews for a client, we were able to catch a misallocation before the required report submission. Frequent reconciliations allow you to identify and correct discrepancies early, keeping your records audit-ready.
Invest in Staff Training and Communication
Ensure that both finance and program staff understand the financial and reporting requirements tied to each grant. Providing ongoing training and fostering open communication across teams helps create accountability, reduce errors, and support stronger grant management overall.
These practices are central to how we support nonprofit finance teams. When these practices are built into your workflow, you can improve efficiency, strengthen compliance, and build long-term funder confidence.
How the OBBBA Affects Grant Accounting and Compliance
The One Big Beautiful Bill Act (OBBBA) introduces new rules that directly impact how organizations manage and report grant funding. These changes influence compliance in three key areas:
- Inadequate Documentation: This is the most common issue. Missing receipts, incomplete invoices, or insufficient time tracking for grant-funded staff are among the most frequent compliance issues. Without proper records, it becomes difficult to justify expenses during an audit.
- Budget Deviations: Exceeding an approved budget category without prior funder approval creates significant compliance risk.. Significant changes should always be communicated in advance and documented with written authorization.
- Incorrect Cost Allocation: Charging expenses to the wrong grant or allocating them to general funds can result in serious compliance violations. A clear, consistent system for assigning costs ensures accuracy and protects the integrity of financial reporting.
- Managing Multiple Funding Sources: This is one of the most complex challenges, particularly when an organization receives different grants for the same program. Each funder often dictates unique rules for allowable expenses, indirect cost rates, time-and-effort reporting, and close-out deadlines. Most accounting systems aren’t designed to track these requirements in parallel, which is where breakdowns often occur.
Partnering with Scrubbed for Grant Accounting Compliance
Navigating the complexities of grant accounting and compliance can be overwhelming, especially when your team has limited resources. This is where a partner like Scrubbed can help — especially when internal resources are limited.
Our expert team can offer:
- New Reporting Requirements: The OBBBA adds new reporting rules for areas like tipped income, overtime deductions, and certain tax-exempt benefits. Organizations must update their payroll systems and financial documentation processes to accurately track and report this information, especially for grants that cover personnel costs.
- Funding and Programmatic Shifts: The law changes funding levels and requirements for key programs like Medicaid and the Supplemental Nutrition Assistance Program (SNAP). It also affects tax credits for energy-related projects. Organizations with grants in these areas need to be aware of how the OBBBA impacts their program’s scope and budget.
- Increased Audit Scrutiny: With the infusion of new funds for various initiatives, there will be heightened scrutiny on how those funds are spent. This means grant recipients must be extra diligent in their financial management and record-keeping, as auditors will be looking for compliance with both the general Uniform Guidance and the specific new rules from the OBBBA.
The Next Steps for Grant Compliance
Grant accounting is an ongoing process that requires strong controls, consistent documentation, and timely reporting. It supports long-term funding relationships by demonstrating reliability, transparency, and accountability. A proactive, professional approach to grant accounting and compliance is the best way to protect your funding and ensure your organization’s mission is achieved and sustained for years to come.
If your organization is ready to strengthen its grant accounting practices, Scrubbed can help. Our team provides the expertise, tools, and support you need to stay compliant and audit-ready, so you can focus on creating impact.
Book a consultation with Scrubbed to discuss your current grant compliance process and where you may need additional support.
